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2026
(53) de Santana CO, Spealman P, Vispo C, Gresham D, Saccomano S, LaFratta CN, Jain SS, Dungan RS, & Perron GG^. (2026). “Investigating the distribution of antibiotic resistance genes in relation to bacterial, fungal, and functional diversity in a hay field”. Spectrum Microbiology – in press
(52) Luzmore A*, Grauer J*, Barber D, Lau P, Jorgensen G, Jain S, & Perron GG^. (2026). “Seasonal frost improves probiotic and nutrient availability in fermented vegetables”. npj Science of Food – in press. https://doi.org/10.1101/2025.06.27.661941
2025
(51) Perron GG^, Miller LC, Davila-Santiago L, Lau P, & Jain SS. (2025). “Orchards and varietals shape apple and cider local microbial terroirs in the Hudson Valley of New York”. Fermentation. 11(7): 369https://doi.org/10.3390/fermentation11070369
(50) Belardi C, Clark K, E Walsh, Jentsch P, & Perron GG^. (2025). “Agricultural netting does not affect bacterial communities isolated from apples cultivated under holistic management”. Agrosystems, Geosciences, & Environment. e70173 https://doi.org/10.1002/agg2.70173
(49) Cecire MS, McKim A, Castle L, & Perron GG. (2025). “Reframing “at-risk” youth and their intellectual lives through a Humanities-oriented reading and discussion program. Library Quarterly – in press
(48) Jain SS, McLaughlin E, Perron GG, Mallikajuna C, Kim S, Gindinova K, Lundgren SH, Elmelech L, Sonavane U, Joshi R, & Narasimhulu K. (2025). “Inhibition of xpt Guanine riboswitches by a synthetic nucleoside analog. PLOS ONE 20(5):e0322308 https://doi.org/10.1371/journal.pone.0322308
(47) de Santana CO, Spealman P, Gresham DJJ, Dueker ME*, & Perron GG*^. (2025). “Bacterial and DNA contamination of a small freshwater effluent used for drinking water after a large precipitation event”. Science of the Total Environment. https://doi.org/10.2139/ssrn.4967587
2024
(46) Lau P, Jain S, Peraza R, & Perron GG^. (2024). “Metagenomes from sourdough starter cultures treated with varying levels of water chlorination”. Microbial Resources Announcement 14:e01001-24.https://doi.org/10.1128/mra.01001-24.
(45) Lau P, Jain S & Perron GG^. (2024). “Water chlorination increases the relative abundance of a pathogenic bacteria marker in sourdough starter cultures”. In print – Microbiology Spectrum (bioRvix/2023/531128).
(44) Dueker, ME, Lansbury B, &Perron GG. (2024). “Connecting the riparian phyllosphere to water microbial communities in a freshwater stream system”. In print –Atmosphere (preprints-108505).
(43) Arjunan S, IP CHL, WEI Q, Liu X, Carter SWD, Oguz G, Ramasamy A, Illanes SE, Perron GG, Fee EL, Li SWL, Seah MKY, Choolani MA, & Kemp MW. (2024). “Simulated lunar microgravity transiently arrests growth and induces blastocyte-chondrocyte lineage differentiation in human Wharton’s jelly stem cells”. npj Microgravity 10, 51.
2023
(42) Rattray JB, Walden R, Márquez-Zacarías P, Molotkova E, Perron GG, Solis-Lemus C, Alarcon P, & Brown S. (2023). “Machine learning identification of Pseudomonas aeruginosa strains from colony image data”. PLoS Computational Biology 19(12):e1011699.
(41) Ghoul M, Andersen SB, Krogh Johansen H, Jelsbak L, Molin S, Perron GG, & Griffin AS. (2023). “Long-term evolution of antibiotic persistence in Pseudomonas aeruginosa lung infections.” Evolution Letters 7(6):389-400.
(40) Noble-Strohm T*, Ryan S*, de Santana CO, Dueker ME, & Perron GG^. (2023). “Soil microbiomes associated with Kernza perennial grain growing under temperate agricultural conditions”. Microbiology Resource Announcements e0024-23.
(39) de Santana CO, Spealman P, &Perron GG^. (2023). “Antibiotic resistance: a mobile target”. eLife 12:e86697.
(38) de Santana CO, Spealman P, Gresham DJJ, & Perron GG^. (2023). “Metagenomes from soil along an agricultural transect in Ulster County, New York”. Microbiological Resource Announcements e01015-22.
2022
(37) de Santana CO*, Spealman P*, Azulai D, Reid ME, Dueker ME, Perron GG^. (2022). “Bacteria communities and water quality parameters in riverine water and sediment near wastewater discharges”. Scientific Data 9:578.
(36) Peraza R & Perron GG^. (2022). “Investigating the microbial terroir of fermented foods prepared in a professional kitchen”. International Journal of Gastronomy and Food Sciences, 28:100509.
2021
(35) Bloomfield SJ, Duong VT, Tuyen HT, Campbell JI, Thomson NR, Parkhill J, Phuc HL, Chau TTH, Maskell DJ, Perron GG, Ngoc NM, Vi LL, Baker S*, & Mather AE*. (2021). “Mobility of antimicrobial-resistance across serovars and disease presentations in non-typhoidal Salmonella from animals and humans in Vietnam”. Microbial Genomics 8(5):mgen000798.
(34) Talamantes M, Schneeberg SR, Pinto A, & Perron GG^. (2021). “Passive exposure to cannabidiol oil does not cause microbiome dysbiosis in larval zebrafish”. Current Research in Microbial Sciences 2:100045.
(33) Mojsoska B, Ghoul M, Perron GG, Jenssen H, & Alatraktchi FA. (2021). “Changes in virulence activity of environmental Pseudomonas aeruginosa isolates exposed to sub-inhibitory concentrations of three common antibiotics”.PLoS ONE 16(3): e0248014.
2020
(32) Perron GG, Neupane T, & Mendoza R. (2020) “Draft genome sequences of Bacillus subtilis strains TNC1(2019), TNC3 (2019), TNW1(2019), as well as Bacillus velezensis strains TNC2(2019), and TNW2(2019), isolated from cabbage kimchee”. Microbial Resource Announcements 9(23):e00085-20.
2019
(31) Menzoda R, Jain SS, & Perron GG^. (2019). “Draft genome sequences of Bacillus spp. strains RM1(2019), RM2(2019), RM9(2019), RM11(2019), and RM15(2019), isolated from temperate soils in the Hudson River Valley, NY”. Microbial Resource Announcements 8(50).
(30) Miller L, Perron GG, & Collins C. (2019). “Plant-driven changes in soil microbial communities influence seed germination through negative feedbacks”. Ecology and Evolution 9(16)9298-9311.
(29) Kraemer S, Ramachandran A, & Perron GG^. (2019). “Antibiotic pollution in the environment: from microbial ecology to public policy”. Microorganisms 7(6):180.
(28) Clarke A, Azulai D, M Elias Dueker, Vos M, & Perron GG^. (2019). “Triclosan alters microbial communities in freshwater microcosms”. Water 11:961.
2018
(27) Pindling S, Zheng B, Azulai D, Dahan, D, & Perron GG^. (2018). “Dysbiosis and early mortality in zebrafish larvae exposed to subclinical concentrations of streptomycin”. FEMS Microbiology Letters 365(18) fny188.
(26) Mather AE, Phuong LT, Gao Y, Clare S, Mukhopadhyay S, Goulding DA, Hoang NTD, Tuyen HT, Lan NPH, Thompson CN, Trang NHTT, Carrique-Mas J, Tue NT, Campbell JI, Rabaa MA, Thanh DP, Harcourt K, Perron GG, Coia JE, Brown DJ, Okoro C, Parkhill J, Thomson NR, Chau NVV, Thwaites GE, Maskell DJ, Dougan G, Kenney LJ, & Baker S. (2018). “New variant of multidrug-resistant Salmonella enterica serovar Typhimurium associated with invasive disease in immuno-compromised patients in Vietnam”. mBio 9(5) e01056-18.
(25) Dahan D, Jude BA, Lamendella G, Keesing F, & Perron GG^. (2018). “Exposure to arsenic alters the microbiome of larval zebrafish”. Frontiers in Microbiology 9:1323.
2017
(24) Doing G, Perron GG, & Jude BA. (2017). “Draft genome of violacein producing Iodobacter sp, from Hudson Valley watershed”. Genome Announcements e01429-17.
(23) Bettina AM, Doing G, O’Brien K, Perron GG, & Jude BA. (2017). “Draft genomes of phenotypically distinct Janthinobacterium sp isolates cultured from the Hudson River Valley Watershed”. Genome Announcements e01426-17.
(22) O’Brien K, Perron GG, & Jude BA. (2017). “Draft genome of a red pigmented Janthinobacterium sp., native to the Hudson Valley watershed”. Genome Announcements e01429-17.
(21) Gaucher ML, Perron GG, Arsenault J, Letellier A, Boulianne M, & Quessy S. (2017). “Recurring necrotic enteritis outbreaks in commercial broiler chicken flocks strongly influence toxin gene carriage and species richness in the resident Clostridium perfringens population”. Frontiers in Microbiology 8:881.
(20) Shrestha SD, Guttman DS, & Perron GG^. (2017). “Draft genome sequences of ten environmental Pseudomonas aeruginosa strains isolated from soils, sediments, and waters”. Genome Announcements e00804-17.
2016
(19) McLeman A, Sierocinski P, Hesse E, Buckling A, Perron GG, Hülter N, Johnsen PJ, & Vos M. (2016). “No effect of natural transformation on the evolution of resistance to bacteriophages in the Acinetobacter baylyi model system”. Scientific Reports 6:37144.
2015
(18) Perron GG^, Whyte L, Turnbaugh PJ, Goordial J, Hanage WP, Dantas G, & Desai MM. (2015). “Functional characterization of bacteria isolated from ancient Arctic soil exposes diverse resistance mechanisms to modern antibiotics”. PLoS ONE 10(3): e0069533.
(17) Freschi L, Jeukens J, Kukavica-Ibrulj I, Boyle B, Dupont M-J, Laroche J, Larose S, Maaroufi H, Fothergill JL, Moore M, Winsor GL, Aaron SD, Barbeau J, Bell SC, Burns JL, Camara M, Cantin A, Charette SJ, Dewar K, Déziel E, Grimwood K, Hancock REW, Harrison JJ, Heeb S, Jelsbak L, Jia B, Kenna DT, Kidd TJ, Klockgether J, Lam JS, Lamont IL, Lewenza S, Loman N, Malouin F, McArthur AG, McKeown J, Milot J, Naghra H, Nguyen D, Pereira SK, Perron GG, Rainey PB, Rousseau S, Santos PM, Stephenson A, Taylor V, Turton JF, Waglechner N, Williams P, Thrane SW, Wright GD, Brinkman FSL, Tucker NP, Tümmler B, Winstanley C, Leveque RC. (2015). “Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium”. Frontiers in Microbiology 6:1036.
(16) Perron GG^, Inglis RF, Pennings PS & Cobey S. (2015). “Fighting microbial drug resistance: a primer on the role of evolutionary biology in public health”. Evolutionary Applications 8:211-213.
2014
(15) Kemp MW, Lazarus BM, Perron GG, Hanage WP, & Chapman E. (2014). Biomedical Ph.D students enrolled in two elite universities in the United Kingdom and the United States report adopting multiple learning relationships”. PLoS ONE. 9:e103075.
2012
(14) Perron GG^, Lee AEG, Wang Y, Huang WE, & Barraclough TG (2012). “Bacterial recombination promotes the evolution of multidrug-resistance in functionally diverse populations”. Proceedings B. 279:1477-1484.
2010
(13) MacLean RC, Perron GG, & Gardner A. (2010). “Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape of rifampicin resistance in Pseudomonas aeruginosa”. Genetics. 186:1345-1354.
(12) Perron GG^, Hall A, & Buckling A. (2010). “Hypermutability and compensatory adaptation in antibiotic-resistant bacteria”. The American Naturalist. 176:303-311.
(11) MacLean RC, Hall AR, Perron GG, & Buckling A. (2010). “The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts”. Discovery Medicine. 10:112-118.
(10) MacLean RC, Hall AR, Perron GG, & Buckling A. (2010). “The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts”. Nature Reviews Genetics. 11:405-414.
(9) Kohler T, Perron GG, Buckling A. & van Delden C. (2010). “Quorum-sensing inhibition selects for virulence and cooperation in Pseudomonas aeruginosa”. PLoS Pathogens. 6:e1000883.
2009
(8) Benmayor R, Hodgson D, Perron GG, & Buckling A. (2009). “Host mixing and disease emergence”.Current Biology. 19:1-4.
(7) Ward H, Perron GG, & MacLean RC. (2009). “The cost of multidrug resistance in Pseudomonas aeruginosa”. Journal of Evolutionary Biology. 22:997-1003.
2008
(6) Perron GG^, Quessy S, & Bell G. (2008). “A reservoir of drug-resistant pathogens in asymptomatic hosts”. PLoS ONE. 3:e3749.
(5) Perron GG^, Gonzalez A, & Buckling A. (2008). “The rate of environmental change drives adaptation to an antibiotic sink”. Journal of Evolutionary Biology. 21:1724-1731.
(4) Perron GG^, Bell G, & Quessy S. (2008). “Parallel evolution of multidrug-resistance in Salmonella enterica isolated from swine”.FEMS Microbiology Letters. 281:17-22.
2007
(3) Perron GG^, Gonzalez A, & Buckling A. (2007). “Source-sink dynamics shape the evolution of antibiotic resistance and its associated pleiotropic fitness cost”. Proceedings B. 274:2351-2356.
(2) Perron GG^, Quessy S, Letellier A, & Bell G. (2007). “Genotypic diversity and antimicrobial resistance in asymptomatic Salmonella enterica serotype Typhimurium DT104”. Infection, Genetics and Evolution. 7:223-228.
2006
(1) Perron GG, Zasloff M, & Bell G. (2006). “Experimental evolution of resistance to an antimicrobial peptide”. Proceedings B. 273: 251-256.^ Corresponding author
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